Tag: Susanne Kutter

Food for Thought: Weekly Wrap-Up

The EHEC epidemic in Germany with 4,300 patients and 50 deaths has changed the way public health institutions will deal with future epidemics, writes Christina Hucklenbroich in Frankfurter Allgemeine Zeitung (FAZ). She cites microbiologists involved in the rapid sequencing of the EHEC strain who think that the epidemic gave birth to the new discipline of “prospective genomic epidemiology”. To date, sequencing has been performed retrospectively only. However, using the novel Ion Torrent PGM HGS platform, scientists from the University of Münster were able to sequence the EHEC strain responsible for the outbreak within 62 hours. The scientists now think of a software generating a plain language report interpreting the genome and analyzing for toxins and antibiotics resistances of the germ in question so that immediate therapeutic and prophylactic consequences are possible.

Gas, electricity and hydrogen from algae are in the focus of a story by Susanne Kutter in Wirtschaftswoche. She features Sven Kerzenmacher and Johannes Gescher from the University of Freiburg and their efforts to produce electrical current directly from bacteria. The technology is based on the Shewanella bacterium which can transfer electrons generated by breakdown of sugar or other nutrients from the cell surface to conductive materials. Shewanella lives in fresh-, brack- and seawater and thrives on organic waste. The researchers are now trying to design a Shewanella-based mini-powerplant the size of a refrigerator which is able to produce 5-10 Watts of electricity per day – sufficient to meet the demand of a four-person household. Among others, Kutter also features a dual-chamber solar module developed by researchers from Leipzig, Karlsruhe and Bremen. In the first chamber, algae are forced by an excess of oxygen to produce hydrocarbons (“photorespiration”). The hydrocarbons enter the second chamber via a membrane and are used by bacteria to produce methane under anaerobic conditions. Readers interested in learning more about Shewanella may find regular updates on Shewanella Blogger.

While algae seem to be an ideal biofuel replacement for gasoline in the first place, it has turned out that the economics is a problem, writes Erica Gies in Forbes. Gies revisits former biofuel-from-algae startups that are now turning to more profitable products, using “green” chemistry to replace petrochemicals or unsustainable bio-based oils.

Also in Forbes, Matthew Herper deals with an op-ed in Nature Reviews Drug Discovery by John L. LaMattina, ex-CEO of Pfizer, Inc. LaMattina writes the pharma’s M&A activities have had a “devastating” effect of research and development efforts which will impact the industry over the next decade. The comment is all the more telling as LaMattina was pivotal in Pfizer’s acquisitions of Warner-Lambert, Pharmacia, Wyeth and many other companies. LaMattina summarizes that the consolidation by M&A led to fewer companies pursuing novel ideas and disruptions in research processes. Friction is caused, among others, by the need to streamline computer systems, procedures to track side-effects and others. Usually, a merger delays the start of any new research project by nine months. LaMattina’s comment can be accessed here.

Brandon Keim in Wired explains that most genetic differences in people are not caused by mutations but by variations in the genome’s architecture. At present, sequencing is designed to identify SNPs and as every sequencing method is breaking down the DNA in smaller pieces most genomic studies a blind to larger variations. First sequencing studies looking at larger DNA pieces now revealed that individuals seem to be distinguished less by their SNPs than by their structural variations, i.e. wholesale duplications and reversals, or unexpected additions and omissions of long DNA sequences.

Finally, Catherine de Lange in the New Scientist features the first car plugging into the driver’s brain to cut response times in case the car needs to stop suddenly. The invention of Stefan Haufe from the Berlin Institute of Technology uses an EEG headset and sensors on the leg to detect neuronal patterns and muscle tension to find out that the driver intends to apply the brakes. The system improves response times by 130 milliseconds which translates into the length of a small car when stopping from a speed of 100 km/h.

Food for Thought: Weekly Wrap-Up

This week, Frankfurter Allgemeine Zeitung (FAZ) deals with potential origins of the enterohemorrhagic E. coli (EHEC) epidemic in Germany. Christina Hucklenbroich details the consequences of feeding cattle mixed provender, a forage that changes the environment of the intestinal tract so that it becomes an ideal habitat for bacteria like E. coli. In a separate article the same author deals with an EHEC outbreak in 1997 in the US which affected mostly women – similar to the current epidemic in Germany. Back then, the source had been alfalfa sprouts used in salads. While the ultimate source had never been found, scientists suspected that already the seeds had been contaminated. Richard Friebe, also in FAZ, deals with slurry from pigs, cattle, and fowl that is know to contain all sorts of bacteria and viruses. It is used either directly as fertilizer (though not on vegetables and salad plants) or may contaminate adjacent fields through spillover, spray or via irrigation using water contaminated with slurry.

Susanne Kutter in Wirtschaftswoche introduces Holger Zinke, co-founder and CEO of BRAIN AG, a biotech company specialized on “white” biotechnology, using the skills of microbes to re-design industrial processes or to come up with entirely new ones. Thereby, pharma and chemical industry can save energy, money, and expenses for raw materials. The article is part of a series on pioneers of the “greentech-era”, trying to change the industry to make it more energy-efficient and sustainable.

In Forbes, Matthew Herper analyses why scientists in Germany and China used small desktop sequencers by Ion Torrent rather than big machines by Illumina, Life or 454 Life Sciences to decipher the sequence of the EHEC strain rampaging through Germany. Herper claims it is speed and cost. However, the choice was also influenced by the fact that the sequence of the new strain matched strains with sequences available in public databases relatively closely so that puzzling together the short sequence data generated by the machine was easy.

In reporting on this year’s annual conference of the American Society of Clinical Oncology (ASCO), Andrew Pollack in The New York Times (NYT) introduces two drugs for the treatment of melanoma: vemurafenib (developed by Genentech, part of Roche Group), which attacks a specific mutation accelerating tumor growth and Yervoi ipilimumab (developed by Bristol-Myers Squibb), which unleashes the body’s immune system to fight the cancer. Yervoi was approved by FDA in March this year. Pollack also features latest clinical results for Aromasin exemestane, a drug marketed for preventing recurrences of breast cancer.

Gina Kolata, also in NYT, deals with the phenomenon of “linguistic toxicity”, i.e. drug labels listing more and more side effects, even contradictory ones such as that a medication can cause diarrhea or constipation. As of today, drug labels in the US list an average of 94 side effects (the top numbers already are exceeding 500), despite efforts of FDA to make drug makers avoid listing of side effects that are infrequent and minor, commonly observed in the absence of drug therapy or not plausibly related to drug therapy. Main reason is pharma companies trying to protect themselves against lawsuits.

Last not least, New Scientist features the latest advice for those of you on diet: psychologist found that if you succeed convincing yourself that everything you eat bears enormous amounts of calories, your ghrelin hormone level will drop much lower after eating so that you feel being full faster.

Food for Thought: Weekly Wrap-Up

In Frankfurter Allgemeine Zeitung (FAZ) Martina Lenzen-Schulte this week reports about an oncology symposion in Wiesbaden/Germany that dealt with oncology patients increasingly turning towards alternative medicines – 40 to 70% according to recent estimates. Oncologists now start to notice they cannot ignore patents’ needs and hopes, and therefore a number of clinicians have turned to looking at available studies on complementary medicine to separate the wheat from the chaff. However, it turns out that many of these studies – on mistletoe therapy as well as on dietary recommendations – are insufficient to provide sound evidence.

Werner Bartens in Sueddeutsche Zeitung features a 3,700 patients study published in the Journal of the American Medical Association demonstrating that contrary to common wisdom low salt diets increase the risk of heart attacks and stroke.

In Wirtschaftswoche, Susanne Kutter introduces the Diapat diagnostic test developed by German biotech company Mosaiques DiaPat GmbH that analyses more than 6,000 different peptide and protein molecules in human urine in one run. The test can be used to diagnose and even predict the onset of diseases. It has just been approved by FDA for the diagnosis of renal diseases. Already, the company markets a prostate cancer urine test in Germany. Mosaique’s test, Kutter claims, is but one of the many achievements to come from proteomics. She adds that the tests will have the potential to save the healthcare system billions of Euros.

Haydn Shaughnessy in Forbes states the record of cancer treatment still looks poor, with cancer mortality not improving a lot – as for example compared to heart diseases. Likewise, many preventive measures such as exercise and low fat diets don’t work. Shaughnessy therefore makes the case to support crowdsourcing approaches to develop a cancer cure like Pink Army and Cancer Commons (see akampioneer’s earlier entry on Open Source Principles – a Concept for the Life Sciences?). Also in Forbes, Matthew Herper forecasts that Pfizer will break itself up and spin out companies soon.

Eric Pfanner in New York Times looks at new European ventures to fill a void in world news after so many news organizations are laying off journalists or closing shop. As examples, he introduces Worldcrunch, a web-based start-up translating newspaper articles from around the world into English and Presseurop which translates into other languages, too.

In the New Scientist Jessica Hamzelou writes that people easily distracted might have more grey matter in their brains than focused people. In a separate article, she also features a pacemaker-like, implantable device that can deliver timed doses of medications for a year. Boonsri Dickinson, also in New Scientist, interviews nobelist Eizabeth Blackburn, the co-discoverer of the telomerase enzyme and its role in aging. Blackburn co-founded biotech company Telome Health, which is now starting to sell a test for telomere length. While at present it is sold for research purposes, e.g. to know more about telomer length as markers of aging, the test will be offered to the public through physicians for $200 later this year. Ferris Jabr in New Scientist introduces an approach fastening nanocapsules filled with interleukins to T cells as a way to cure cancer. So far, it seems to work in mice.

And here our favorite quote from Matthew Herper’s blog, who recently mused about whether entrepreneurs share some genetic characteristics, and if so, whether one could invent an antibody to turn someone into an entrepreneur: “‘Entrepreneur Antibody:’ Serious Side Effects Might Include Visual Hallucinations of Venture Capital.”

And finally, Norbert Lossau in Die Welt features a study by LinkedIn into the most common given names of CEOs, finding that in Germany they are Wolfgang, Christoph and Michael. In France, Gilles is number one, while it is Charles in the UK, Ray in Canada, Guido in Italy and Howard in the US. Marketing people often have short names like Chip, Todd or Trey, while engineers seem to have much longer give names. So think twice before naming your next newborn!

Food for Thought: Weekly Wrap-Up

Sebastian Matthes, Thomas Kuhn, Dieter Duerand and Susanne Kutter this week in Wirtschaftswoche introduce the winners of Innovationspreis 2011 (innovation award 2011). In the “Startup” category, the winner is Human Machine Intelligence, a Heidelberg-based IT company that developed the “Lingua” software able to understand and answer complete spoken sentences. “Big corporation” category winner is machine building company Freudenberg for its development of production processes that save 85% steel and do not produce waste. In the “medium-sized business” category, the winner is med tech firm Carl Zeiss Meditec which developed Intrabeam, a new cancer radiation therapy device that saves breast cancer patients week-long radiation therapy cycles and improves quality of life.

Also in Wirtschaftswoche, Andreas Menn features innovative printing technologies based on conductive ink and provides glimpses into the future of organic electronics for everyday products: flexible and printed electronic displays for ads and packages, loudspeakers from plastic foil, broadcasting metro tickets and pill containers that inform a cell phone software once a patient has withdrawn a pill. Among others, the article introduces German startup Printechnologics, based in Chemnitz, whose Aircode Touch technology can mark any type of paper with an invisible code that can be recognized and processed by smartphone touchscreens so that it can direct users to websites and/or authenticity certificates. Another German startup, Heliatek in Dresden, is developing printed solar cells that are to be sold by the meter in building supply stores.

Steven Salzberg in Forbes this week features a vitriolic comment of the decision of respected BioMedCentral (BMC), owned by Springer Science publishing house, to add a journal devoted to “Traditional Chinese Medicine”, or TCM,  to its portfolio of respected, peer-reviewed scientific journals. He introduces a “laughably bad study” and states, readers should bring “a high tolerance for quackery”, concluding: “BMC should be embarrassed to be publishing journals that promote anti-scientific theories and otherwise muddy the literature. By supporting these journals, they undermine the credibility of many excellent BMC journals. They should cut these journals loose.”

The Economist this week writes about “a serious gap in biologists’ understanding of the diversity of life”, featuring metagenomics research results that points to the existence of a new domain of life in the oceans, adding to the already known domains of archaea, bacteria, and eukaryotes. Another feature deals with back-scattering interferometry (BSI) that can be applied to studying membrane proteins unmodified and in situ using a laser in a simple, low-cost way. The technology may be used to study the interference of membrane receptors with drug candidates and to understand side effects and differences in the response of patients to already marketed drugs. Already, the inventors founded a startup, Molecular Sensing, in San Francisco, Calif.

In New Scientist this week, Helen Thomson reports that a brain electronic implant in a paralyzed women successfully passed the 1,000-day milestone. Wendy Zukerman describes that a new, non-invasive test might soon be available to diagnose the nerve damage associated with diabetes to predict the amputation risk of diabetes patients, and Peter Aldhouse writes about his first encounter with robots at Complete Genomics, a California-based startup that offers large-scale, complete human genome sequencing services as an end-to-end outsourced service to companies and research institutions.

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